Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916741.1_cds_XP_016466433.1_59286
CDS Infomation

[gene=LOC107789168] [db_xref=GeneID:107789168] [protein=replication factor C subunit 3-like] [protein_id=XP_016466433.1] [location=join(12269..12682,12779..13351,13451..13564,13954..13986,14687..14858,14952..15130,15306..15442,15568..15663,16071..16140,16237..16314,16416..16497,17322..17419)] [gbkey=CDS]
Sequence

ATGCCGAGTCTATCAATCCCACGTTCAAAATCTGTTCCCTGCAACATATCAGAAACTCAA
AATTGTCCTACAAACTCATTTACAATACCTCCTTCAGTCAGATCCTCCAAATCAGCTGAC
TCATTAAAACCAACATGGCCTAAAAATGCAAATGAGCTTATATCAAGAAAGGGTGGCTCA
TCTTCAAAGAACTCAAATTTAACAGCTGGTAATCTCGCGGAATTCAATAAAAGAAATGCA
ATTCAAGAAGAAAAGAGATACTCAGCAAGAAGTCCATATTATAAAGGACTTACTGATTCG
TCCAAAGTGATTAATCGACAGAAGTTATTAGCAGAGTTTAGTAGTAGTCCTGGAAAAGAT
AGCATATCAGCTTCTTCTACAAGTTCAAGTTCTAAATCCAATTTAGCTAGCAAGGTACAA
GAATGGAGTGCATCTTACTTTGTACGCAAAGGCAAAGAAGAAAGAACATCCTTCTCCTTG
AATACTTCTATTGGGAACAAGAACATCCAAGATTCATCTTCATCAGAGACAAAAGATAAA
GGAGTAATCAGAACGACAATCGGAGAAGAACTTGGTATAGATCGGAAAGGAGTTAGAAAA
TGTTCAAGAAAAAGCAGACAGAGACTTTCAAAATCAGATAAGGGGAAGCCTTTGAGGGAG
AGAGCATCAGAAATGCAAACAAATATAGTAGTACTACCACCAGCCCCTGCACCACCAATA
ACATCACCACCAAAATTGTCAATACCATCTCCACCGCCAACTCCATTAATATTGCAAACA
TCATTGCAAGATGAAGAAATTGAAGCAGTACCATTACCAGCTTCACCAACTCAAACTACA
GAGGATGAAAAAGATACTACAAAAGAGAAGGATATTACAAGTCCAGAACAGAAAGACAAA
AGATTTAAATGGGCTGATAAGTATAGGCCTAATGCTCTTAAAGATTTTCTATGCAATAGA
AATACTGCACTTGAACTGAAGGCTCTGGCAGAAACAGATGGCAGTAATCGTCATTATATA
TTTGCAGGACAGCCAGGAGTAGGGAAAAGAACCATGATATTTGCTTTGCTTCGCGAAGTT
TTTGGACATGATAAAATACAGGCAAGAGAAAAGTGCAAGGTGTTCTACTTAAAGGGAGAA
GCAGTGCCGAGCATCCAAGTAAATGTGAAGGAATCAAAGAAACATGTTGAGATCAATCTC
TCTGAAACTAAAGGCTACGAGAAACATGTCATCGTAGAACTAATCAATGAGAGAAAGCAC
AAAGCATCCATCAGATCAGCACCTTGCCATCATGATGACTGTAAAGCTATCATTCTTGGT
GAAGCTGACAAGCTATCAACAGATGTTTTGCTATATACCAAATGGATGTTAGAAAGATAT
ACAGGTTGTTATAAGGTCTTCTTTTGCTGCAGTGATATCACCAAGCTCCAGCCAATTAAG
TCTATTTGTAAGGTTGTTCATCTCCAAAAACCTTCAGATGACGAGATTGTAGACGTCTTG
GAATTCATAGCAAAAAAGGAAGAAATAGAACTACCACATAAACTGGCAGCACAGATTGCT
AGTAACTCCAAAAGTAACCTACGTCAAGCAATTCGCTCTTTTGAAGCTACTTGGCACTTC
AACACTTGCTTGACTGAGAATCAAGAAATCAAGACAGGGTGGGAAGATGACATTGCAAAG
ATTGCTAAAAACATAATTGAGGAGCAAAGCCCGAAGCAGCTATATGATATCCGTGGGAAG
CTGCAAAATTTGATAGAGCACAACGTGTCTGCTGAGTTCATCTTTAATACTTTGGTAGAA
GAACTAAAGAGTAATTTGGATGACCAATTCCACAAGGAAATTGACAATCTGAAAATGAAG
TACAATATAAATTCAAAGGATCTGGAACAAGGAAAAAGTGATAATGATGCAGTGAAAAAG
ATTGTTCTCCAATTTATGAAGGTTGAAGAGTTCATAGCTAAATTCATGAGCTGGTATAAG
ACTTCAGTTCTGAAGAAAGGAAATCACAACCCCTCACAAGCCTATCCCTCCAAGGGGAAT
AATTAG

Peptide Sequence

PEP ID

XP_016466433.1
PEP Infomation

PREDICTED: replication factor C subunit 3-like [Nicotiana tabacum]
Sequence

MPSLSIPRSKSVPCNISETQNCPTNSFTIPPSVRSSKSADSLKPTWPKNANELISRKGGS
SSKNSNLTAGNLAEFNKRNAIQEEKRYSARSPYYKGLTDSSKVINRQKLLAEFSSSPGKD
SISASSTSSSSKSNLASKVQEWSASYFVRKGKEERTSFSLNTSIGNKNIQDSSSSETKDK
GVIRTTIGEELGIDRKGVRKCSRKSRQRLSKSDKGKPLRERASEMQTNIVVLPPAPAPPI
TSPPKLSIPSPPPTPLILQTSLQDEEIEAVPLPASPTQTTEDEKDTTKEKDITSPEQKDK
RFKWADKYRPNALKDFLCNRNTALELKALAETDGSNRHYIFAGQPGVGKRTMIFALLREV
FGHDKIQAREKCKVFYLKGEAVPSIQVNVKESKKHVEINLSETKGYEKHVIVELINERKH
KASIRSAPCHHDDCKAIILGEADKLSTDVLLYTKWMLERYTGCYKVFFCCSDITKLQPIK
SICKVVHLQKPSDDEIVDVLEFIAKKEEIELPHKLAAQIASNSKSNLRQAIRSFEATWHF
NTCLTENQEIKTGWEDDIAKIAKNIIEEQSPKQLYDIRGKLQNLIEHNVSAEFIFNTLVE
ELKSNLDDQFHKEIDNLKMKYNINSKDLEQGKSDNDAVKKIVLQFMKVEEFIAKFMSWYK
TSVLKKGNHNPSQAYPSKGNN

Transcript Sequence

Gene sequence data has not been registered.